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Latest news:

Nov 26, 2012:
DireX presentation and tutorial at EMBL Hamburg April 15 - 19, 2013 as part of the EMBO practical course on Computational Structural Biology

Oct 25, 2012:
Congratulations to Benno on his successfull PhD Defense!

Sep 26, 2010:
DireX presentation and tutorial at EMBL Heidelberg on Oct 5 (2010).

Oct 25, 2009:
DireX will be presented at the NCMI Workshop for Cryo-EM Modeling in Houston, Jan 14-17 (2010)

Publications


2013

30. B. Falkner and G.F. Schröder. Cross-validation in cryo-electron microscopy based structural modeling
PNAS accepted.
29. D.-H. Chen, D. Madan, J. Weaver, Z. Lin, G.F. Schröder, W. Chiu, H.S. Rye. Visualizing GroEL/ES in the Act of Encapsulating a Folding Protein
Cell accepted.
28. N. Kalisman, G.F. Schröder, M. Levitt. The Crystal Structures of the Eukaryotic Chaperonin CCT Reveal its Functional Partitioning
Structure (2013) 21:540–549. [PDF]
27. X. Deng, J. Morris, C. Chaton, G.F. Schröder, W.S. Davidson and T.B. Thompson. Small-angle X-ray Scattering of Apolipoprotein A-IV Reveals the Importance of Its Termini for Structural Stability
J. Biol. Chem. (2013) 288(7):4854-4866. [PDF]

2012

26. X. Yu, C. Goforth, C. Meyer, R. Rachel, R. Wirth, G.F. Schröder, and E.H. Egelman. Filaments from Ignicoccus hospitalis Show Diversity of Packing in Proteins Containing N-terminal Type IV Pilin Helices.
J. Mol. Biol. (2012) 422(2): 274-281.
25. A.T. Brunger, P.D. Adams, P. Fromme, R. Fromme, M. Levitt, and G.F. Schröder. Improving the accuracy of macromolecular structure refinement at 7 Å resolution.
Structure (2012), 20(6):957-966.
24. T. Sabir, A. Toulmin, L. Ma, A.C. Jones, P. McGlynn, G.F. Schröder, and S.W. Magennis. Branchpoint expansion in a fully-complementary three-way DNA junction.
J. Am. Chem. Soc. (2012), 134(14):6280–6285. [PDF] ( See Cover)
23. Z. Wang, G.F. Schröder. Real-space Refinement with DireX: From Global Fitting to Side-chain Improvements.
Biopolymers (2012), 97(9):687-697.
22. R. Henderson, A. Sali, M.L. Baker, B. Carragher, B. Devkota, K.H. Downing, E.H. Egelman, Z. Feng, J. Frank, N. Grigorieff, W. Jiang, S.J. Ludtke, O. Medalia, P.A. Penczek, P.B. Rosenthal, M.G. Rossmann, M.F. Schmid, G.F. Schröder, A.C. Steven, D.L. Stokes, J.D. Westbrook, W. Wriggers, H. Yang, J. Young, H.M. Berman, W. Chiu, G.J. Kleywegt, C.L. Lawson. Outcome of the First Electron Microscopy Validation Task Force Meeting.
Structure (2012) 20:205-214. [PDF]
21. D.J. O'Donovan, I. Stokes-Rees, Y. Nam, S. Blacklow, G.F. Schröder, A.T. Brunger, Piotr Sliz. A grid-enabled web service for low-resolution crystal structure refinement.
Acta Cryst. (2012) D68:268-276. [PDF]
20. A.T. Brunger, D. Das, A.M. Deacon, J. Grant, T.C. Terwilliger, R.J. Read, P.D. Adams, M. Levitt and G.F. Schröder. Application of DEN-Refinement And Automated Model-Building To A Difficult Case Of Molecular Replacement Phasing: The Structure Of A Putative Succinyl-Diaminopimelate Desuccinylase From Corynebacterium Glutamicum.
Acta Cryst. (2012). D68, 391-403

2011

19. V.E. Galkin, A. Orlova, D. Kudryashov, A. Solodukhin, E. Reisler, G.F. Schröder, and E.H. Egelman. Remodeling of Actin Filaments by ADF/Cofilin Proteins.
PNAS (2011) 108(51):20568-20572 . [PDF]
18. S. Gao, A. von der Malsburg, A. Dick, K. Faelber, G.F. Schröder, O. Haller, G. Kochs, O. Daumke. Three domain architecture of dynamin-like MxA GTPase.
Immunity (2011) 35:514-525. [PDF]
17. Y. Cong, G.F. Schröder, A.S. Meyer, J. Jakana, B. Ma, M.T. Dougherty, M.F. Schmid, S. Reissmann, M. Levitt, S.L. Ludtke, J. Frydman, and W. Chiu. Symmetry-Free Cryo-EM Structures of the Chaperonin TRiC Along its ATPase-Driven Conformational Cycle.
EMBO J (2011) 31:720-730. [PDF]
16. E. Jaenicke, K. Büchler, H. Decker, J. Markl, T. Barends, and G.F. Schröder. The Refined Structure of Functional Unit h of Keyhole Limpet Hemocyanin (KLH1-h) Reveals Disulfide Bridges.
IUBMB Life (2011) 63(3):183-187. [PDF]
15. L. Zerrad, A. Merli, G.F. Schröder, A. Varga, E. Gráczer, P. Pernot, A. Round, M. Vas, and M.W. Bowler. A Spring Loaded Release Mechanism Regulates Domain Movement and Catalysis in Phosphoglycerate Kinase.
JBC (2011) 286:14040-14048. [PDF]
14. T. Sabir, G.F. Schröder, A. Toulmin, P. McGlynn, and S.W. Magennis. Global Structure of Forked DNA in Solution Revealed by High-Resolution Single-Molecule Fluorescence Resonance Energy Transfer.
J. Am. Chem. Soc. (2011) 133(5):1188-1191. [PDF]

2010

13. V.E. Galkin, A. Orlova, G.F. Schröder, E.H. Egelman. Structural Polymorphism in F-actin.
Nat Struct Mol Biol (2010) 17:1318-1323. [PDF]
12. G.F. Schröder, M. Levitt, A.T. Brunger. Super-resolution biomolecular crystallography with low-resolution data.
Nature (2010) 464:1218-1222. [PDF]
See also "Preview" by Randy J. Read "From Poor Resolution to Rich Insight" Structure (2010) 18:664-665.
11. J. Zhang, M.L. Baker, G.F. Schröder, N.R. Douglas, S. Reissmann, J. Jakana, M. Dougherty, C.J. Fu, M. Levitt, S.J. Ludtke, J. Frydman, and W. Chiu. Mechanism of folding chamber closure in a group II chaperonin.
Nature (2010) 463:379-383. [PDF]

2001 - 2009

10. A. K. Wozniak, G.F. Schröder, H. Grubmüller, C.A.M. Seidel, F. Oesterhelt. Single molecule FRET measures bends and kinks in DNA.
PNAS (2008) 105(47):18337-18342. [PDF]
9. O.F. Lange, N.-A. Lakomek, C. Fares, G.F. Schröder, S. Becker, J. Meiler, H. Grubmüller, C. Griesinger, B.L. de Groot. Atomistic residual dipolar coupling ensemble of ubiquitin reveals molecular recognition dynamics up to the microsecond timescale.
Science (2008) 320:1471-1475. [PDF]
8. G.F. Schröder, A.T. Brunger, and M. Levitt. Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution.
Structure (2007) 15:1630-1641. [PDF]
7. G. F. Schröder, U. Alexiev, and H. Grubmüller. Simulation of fluorescence anisotropy experiments Probing protein flexibility.
Biophys. J. (2005) 89:3757-3770. [PDF]
6. A. Wozniak, S. Nottrott, E. Kühn-Hölsken, G. F. Schröder, H. Grubmüller, R. Lührmann, A. M. Seidel and F. Oesterhelt. Detecting protein-induced folding of the U4 snRNA kinkturn by single-molecule multiparameter FRET measurements.
RNA (2005) 11:1545-1554. [PDF]
5. G.F. Schröder; Simulation of Fluorescence Spectroscopy Experiments , PhD Thesis, Universität Göttingen, 2004. [PDF]
4. M. Margittai, J. Widengren, E. Schweinberger, G.F. Schröder, S. Felekyan, E. Haustein, M. König, D. Fasshauer, H. Grubmüller, R. Jahn, and C. A. M. Seidel. Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of Syntaxin 1.
PNAS (2003) 100(26):15516-15521. [PDF]
3. G.F. Schröder and H. Grubmüller. Maximum likelihood trajectories from single molecule fluorescence resonance energy transfer experiments.
J. Chem. Phys. (2003) 119(18):9920-9924. [PDF]
2. G.F. Schröder and H. Grubmüller. FRETsg : Biomolecular structure model building from multiple FRET experiments.
Comp. Phys. Comm. (2003) 158:150-157. [PDF]
1. G.F. Schröder Molekulardynamiksimulation der Flexibilität und Fluoreszenzanisotropie eines an ein Protein gebundenen Farbstoffs, Diploma Thesis, Universität Göttingen, 2001. [PDF]